I have 3 batteries.
One for each engine and another for electronics and lights etc etc.
I have an isolator for each battery. I also have 2 x parallelling (sp) switches and a DVSR >
You can read about the system here
BEP Battery Distribution Cluster - Square | Blue Bottle Marine
Ive one of these 4 gang units and another red and yellow on the other side of the boat.
Its wired up so that I can lose 2 of the 3 batteries and still start an engine and then choose to send power to any of the other batteries at will.