No - definitely not likely they split for one day but fish populations of many species are transient. If you have only dived it once every year though there has been a "lot of water under the bridge" so to speak - especially with any construction going on. If there has been any new piles driven during the last 12 months - the noise created is quite an unpleasant one - and that's sitting inside a tug at anything up to 500 metres away - let alone if you are a species that senses water born vibration as a means of evading predators and feeding. Not saying that is the cause - just offering an example of what may have happened. As for old mate grouper - he will only hang around if he is happy with the location and there is sufficient food. If either is not up to scratch he isn't going to hang around.
As with any scientific sampling, your sample rate can produce vast differences in your conclusions. If you had dived every week for the last 12 months you may have seen a gradual decrease in fish numbers starting from when the jetty was reopened to fishing, or a gradual decrease in the number of species present or a mass exodus once a particular construction phase had started ( seen this myself with water turbidity in Northern WA).
As Si has added - the water temp in the bay apparently had a very abrupt drop a week or two ago - another possible. Given you can only dive when the water is clear, I doubt that would be it but who knows. I do know it's not the only jetty with a lack of life at the minute. I've spent a few nights at Vic Point chasing squid in recent times with very little in the way of bait or squid being seen let alone caught.
Your observation is valid - there's no fish there compared to this time last year. But as to why, without a more regular sampling timeframe and accurate records of climatic and environmental factors, fishing effort and fish counts, any guess as to the reason is exactly that.