In regards to the profish it's all in the pimping mate, you can cut your own hole in the front wall of the internal well and put in a 6inch screw in hatch for the rod storage. This is how I have mine set up and i can fit fully rigged 7foot rods straight in. Don't be discouraged by what comes off the factory floor as the possibilities are only as limited as your imagination. The rudder on the profish can be changed for an electric but I'm not sure what is involved in the change over, I have never bothered with an electric as it sort of defeats the purpose in my opinion.
Anyway, get on a kayak forum and look at how others have rigged their yaks, and keep an eye on their for sale sections as a few bargains often appear from time to time.
Kev